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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
3
single cell RNA-seq
Assay category
154
DNA binding
3
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
69
May, 2021
29
August, 2017
17
September, 2018
16
June, 2019
15
October, 2019
3
July, 2019
3
May, 2019
3
November, 2017
2
August, 2021
Available data
132
bam
128
bigWig
112
bed narrowPeak
53
tagAlign
49
fastq
21
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
3
tsv
1
bed bed3+
Organism
157
Homo sapiens
Biosample type
475
tissue
157
primary cell
102
cell line
74
in vitro differentiated cells
Organ
52
epithelium
39
pancreas
13
vasculature
12
blood vessel
11
vein
8
kidney
7
connective tissue
6
brain
6
musculature of body
2
heart
2
liver
1
eye
Project
113
AMP
44
T1D
Genome assembly (visualization)
128
hg19
99
GRCh38
Lab
90
AMP-T2D consortium
67
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
single cell RNA-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
23
endothelial cell of umbilical vein
11
pancreatic endocrine cell
11
pancreatic alpha cell
9
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