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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
3
MeRIP-seq
Assay category
80
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
9
October, 2019
4
August, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
76
bam
62
fastq
13
bigWig
4
tagAlign
Organism
83
Homo sapiens
Biosample type
163
tissue
83
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
60
liver
11
pancreas
6
blood
6
bodily fluid
5
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
83
AMP
Genome assembly (visualization)
13
hg19
Lab
76
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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