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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
5
MeRIP-seq
Assay category
28
DNA binding
Target of assay
192
histone
192
histone modification
101
broad histone mark
91
narrow histone mark
33
control
13
transcription factor
5
RNA binding protein
5
nucleotide modification
Date released
19
August, 2017
8
May, 2021
5
November, 2020
August, 2021
1
October, 2017
Available data
bam
168
fastq
58
tagAlign
23
bigWig
9
bed bed3+
3
tsv
Organism
33
Homo sapiens
Biosample type
20
tissue
7
in vitro differentiated cells
3
cell line
3
primary cell
Organ
11
pancreas
7
connective tissue
5
adipose tissue
3
epithelium
3
liver
3
musculature of body
1
brain
Project
33
AMP
Genome assembly (visualization)
3
hg19
Lab
20
AMP-T2D consortium
8
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
organ_slims!
heart
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
brain
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
2
cell line
EndoC_BH1
3
primary cell
CD8-positive, alpha-beta T cell
3
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