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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
3
MeRIP-seq
Assay category
99
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
64
November, 2017
13
October, 2019
8
November, 2019
5
August, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
Available data
94
bam
70
fastq
31
bigWig
17
bed narrowPeak
10
bigBed narrowPeak
10
tagAlign
8
bed broadPeak
8
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
470
tissue
157
primary cell
102
cell line
93
in vitro differentiated cells
2
stem cell
Organ
69
liver
21
pancreas
11
epithelium
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
102
AMP
Genome assembly (visualization)
31
hg19
16
GRCh38
Lab
94
AMP-T2D consortium
5
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
69
EndoC_BH1
8
3
Panc1
10
GM12878
6
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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