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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
777
ChIP-seq
2
MeRIP-seq
Assay category
777
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
October, 2019
152
August, 2017
111
May, 2019
82
November, 2017
74
April, 2019
59
October, 2018
50
May, 2020
17
December, 2017
15
October, 2017
7
January, 2019
6
September, 2017
4
December, 2018
3
November, 2018
2
March, 2020
2
November, 2020
Available data
632
bam
486
bigWig
484
bed narrowPeak
312
bigBed narrowPeak
238
tagAlign
140
fastq
35
bed broadPeak
15
bed bed3+
1
tagAlign bed3+
Organism
772
Homo sapiens
Biosample type
779
tissue
272
primary cell
149
in vitro differentiated cells
121
cell line
3
stem cell
Organ
209
brain
115
liver
102
pancreas
76
heart
70
blood vessel
70
vasculature
66
limb
57
connective tissue
56
adipose tissue
35
nerve
29
musculature of body
27
artery
26
kidney
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
777
AMP
2
T1D
Genome assembly (visualization)
461
GRCh38
440
hg19
Lab
777
AMP-T2D consortium
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
779 results
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Clear Filters
ChIP-seq
MeRIP-seq
tissue
liver
107
islet of Langerhans
64
2
subcutaneous abdominal adipose tissue
36
tibial nerve
35
heart left ventricle
30
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