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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
743
ChIP-seq
Assay category
743
DNA binding
Target of assay
744
histone modification
743
histone
448
transcription factor
383
narrow histone mark
359
broad histone mark
302
control
89
RNA binding protein
89
recombinant protein
25
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
160
August, 2017
89
May, 2019
85
November, 2017
60
April, 2019
31
December, 2017
30
October, 2018
27
May, 2020
22
May, 2021
17
August, 2021
16
February, 2018
12
October, 2017
10
November, 2019
6
January, 2019
3
March, 2020
Available data
602
bigWig
598
bed narrowPeak
580
bam
343
bigBed narrowPeak
223
tagAlign
155
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
737
Homo sapiens
Biosample type
592
tissue
primary cell
112
in vitro differentiated cells
37
cell line
2
stem cell
Organ
184
brain
99
liver
93
pancreas
70
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
27
epithelium
25
musculature of body
24
nerve
20
artery
20
kidney
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
739
AMP
4
T1D
Genome assembly (visualization)
569
GRCh38
552
hg19
Lab
720
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
blood
BIOSAMPLE
ASSAY
743 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
51
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 99 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
stem cell
hESC
2
See all biosamples
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