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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
674
ChIP-seq
Assay category
674
DNA binding
Target of assay
675
histone modification
674
histone
460
transcription factor
355
narrow histone mark
319
broad histone mark
276
control
90
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
174
October, 2019
91
August, 2017
89
May, 2019
85
November, 2017
60
April, 2019
31
December, 2017
30
October, 2018
27
May, 2020
22
May, 2021
17
August, 2021
16
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
576
bigWig
572
bed narrowPeak
555
bam
343
bigBed narrowPeak
204
tagAlign
130
fastq
48
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
668
Homo sapiens
Biosample type
559
tissue
primary cell
75
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
99
liver
93
pancreas
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
27
epithelium
25
musculature of body
24
nerve
20
artery
20
kidney
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
670
AMP
4
T1D
Genome assembly (visualization)
544
GRCh38
526
hg19
Lab
651
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
674 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
50
heart left ventricle
24
tibial nerve
24
kidney
20
+ See 97 more…
in vitro differentiated cells
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
definitive endodermal cell
4
+ See 6 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
See all biosamples
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