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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
Assay category
150
DNA binding
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
89
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
August, 2017
24
December, 2017
22
May, 2021
17
August, 2021
16
February, 2018
15
November, 2017
10
November, 2019
7
October, 2019
1
January, 2019
1
March, 2020
Available data
115
bigWig
114
bam
113
bed narrowPeak
81
fastq
37
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
8
bed bed3+
Organism
150
Homo sapiens
Biosample type
592
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
37
connective tissue
30
liver
27
epithelium
20
pancreas
12
embryo
1
blood
1
bodily fluid
Project
148
AMP
2
T1D
Genome assembly (visualization)
114
hg19
110
GRCh38
Lab
127
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
18
inconsistent control read length
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
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