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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
Assay category
193
DNA binding
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
26
August, 2017
21
October, 2019
19
June, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
186
bigWig
184
bed narrowPeak
159
bam
98
tagAlign
47
bigBed narrowPeak
29
fastq
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
193
Homo sapiens
Biosample type
584
tissue
193
primary cell
111
in vitro differentiated cells
37
cell line
2
stem cell
Organ
45
epithelium
17
vasculature
16
blood vessel
15
vein
14
pancreas
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
109
AMP
84
T1D
Genome assembly (visualization)
186
hg19
154
GRCh38
Lab
114
Kyle Gaulton, UCSD
79
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
endothelial cell of umbilical vein
15
skeletal muscle myoblast
12
epithelial cell of proximal tubule
7
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