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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
Assay category
275
DNA binding
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
119
May, 2021
38
August, 2017
32
September, 2018
28
October, 2019
19
June, 2019
18
November, 2017
10
November, 2019
6
August, 2021
3
May, 2019
1
January, 2019
1
March, 2020
Available data
267
bigWig
251
bed narrowPeak
238
bam
109
tagAlign
89
fastq
67
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
3
bed bed3+
Organism
275
Homo sapiens
Biosample type
592
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
78
epithelium
77
pancreas
21
liver
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
2
heart
1
blood
1
bodily fluid
1
eye
Project
189
AMP
86
T1D
Genome assembly (visualization)
267
hg19
230
GRCh38
Lab
158
AMP-T2D consortium
114
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
29
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
275 results
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Clear Filters
ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
+ See 18 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
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