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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
601
ChIP-seq
Assay category
601
DNA binding
Target of assay
602
histone modification
601
histone
311
narrow histone mark
290
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
166
October, 2019
118
August, 2017
89
May, 2019
70
November, 2017
42
April, 2019
35
May, 2024
29
October, 2018
27
May, 2020
12
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
495
bigWig
493
bed narrowPeak
439
bam
288
bigBed narrowPeak
186
tagAlign
67
fastq
35
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
595
Homo sapiens
Biosample type
601
tissue
222
primary cell
105
in vitro differentiated cells
27
cell line
Organ
184
brain
95
heart
68
liver
68
pancreas
54
blood vessel
54
vasculature
49
limb
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
kidney
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
599
AMP
2
T1D
Genome assembly (visualization)
467
GRCh38
411
hg19
Lab
566
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
organ_slims!
kidney
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
601 results
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Clear Filters
ChIP-seq
tissue
liver
63
islet of Langerhans
51
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
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