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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
299
transcription factor
82
recombinant protein
62
control
56
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
15
November, 2017
12
December, 2017
6
August, 2021
Available data
33
bigWig
31
bed narrowPeak
30
bam
27
fastq
25
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
14
tagAlign
3
bed bed3+
Organism
33
Homo sapiens
Biosample type
tissue
18
cell line
12
in vitro differentiated cells
3
primary cell
Organ
93
epithelium
78
pancreas
45
connective tissue
33
liver
17
vasculature
16
blood vessel
15
vein
12
embryo
10
kidney
8
musculature of body
3
brain
2
heart
1
blood
1
bodily fluid
1
eye
Project
33
AMP
Genome assembly (visualization)
33
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
18
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
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