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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
Target of assay
341
transcription factor
115
control
115
histone modification
114
histone
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
32
August, 2017
27
May, 2020
23
December, 2017
15
November, 2017
6
August, 2021
6
February, 2018
5
October, 2019
Available data
93
bigWig
91
bam
91
bed narrowPeak
58
tagAlign
56
fastq
35
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
5
bed bed3+
Organism
114
Homo sapiens
Biosample type
69
tissue
24
in vitro differentiated cells
18
cell line
3
primary cell
Organ
187
brain
151
pancreas
102
liver
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
62
heart
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
114
AMP
Genome assembly (visualization)
93
hg19
80
GRCh38
Lab
111
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
14
inconsistent control read length
BIOSAMPLE
ASSAY
114 results
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Clear Filters
ChIP-seq
tissue
liver
64
right lobe of liver
5
in vitro differentiated cells
hepatocyte
12
pancreatic endoderm
10
Hepatic endoderm
2
cell line
HepG2
18
primary cell
hepatocyte
3
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