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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
Assay category
440
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
256
November, 2017
50
December, 2017
49
November, 2018
36
August, 2017
27
May, 2020
17
August, 2021
5
October, 2019
Available data
415
bigWig
409
bed narrowPeak
405
bam
371
fastq
349
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
58
tagAlign
5
bed bed3+
3
tar
Organism
440
Homo sapiens
Biosample type
315
cell line
108
tissue
14
in vitro differentiated cells
3
primary cell
Organ
440
liver
190
brain
170
pancreas
118
connective tissue
102
epithelium
80
vasculature
78
blood vessel
74
heart
52
blood
52
bodily fluid
49
adipose tissue
49
limb
40
kidney
33
musculature of body
25
artery
24
nerve
15
embryo
15
vein
12
spleen
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
411
hg19
355
GRCh38
Lab
426
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
440 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
liver
101
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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