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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
Assay category
112
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
37
August, 2017
24
December, 2017
21
May, 2021
16
February, 2018
14
August, 2021
Available data
79
bam
78
bed narrowPeak
78
bigWig
65
fastq
26
tagAlign
12
bigBed narrowPeak
8
bed bed3+
Organism
112
Homo sapiens
Biosample type
621
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
37
connective tissue
15
epithelium
12
embryo
12
liver
1
pancreas
Project
112
AMP
Genome assembly (visualization)
78
GRCh38
77
hg19
Lab
92
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
definitive endodermal cell
4
primitive gut cell
4
Hepatic endoderm
2
Posterior foregut
2
endocrine cell
2
posterior foregut
2
pancreatic PP cell
1
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