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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
Assay category
221
DNA binding
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
control
5
RNA binding protein
5
transcription factor
Date released
118
May, 2021
32
September, 2018
27
August, 2017
19
June, 2019
19
October, 2019
3
August, 2021
3
May, 2019
Available data
230
bigWig
216
bed narrowPeak
203
bam
98
tagAlign
73
fastq
47
bigBed narrowPeak
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
221
Homo sapiens
Biosample type
592
tissue
221
primary cell
112
in vitro differentiated cells
24
cell line
2
stem cell
Organ
62
epithelium
58
pancreas
13
blood vessel
13
vasculature
13
vein
10
kidney
8
connective tissue
8
musculature of body
3
liver
2
heart
1
eye
Project
137
AMP
84
T1D
Genome assembly (visualization)
214
hg19
184
GRCh38
Lab
114
Kyle Gaulton, UCSD
107
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
13
pancreatic ductal cell
13
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