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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
693
ChIP-seq
Assay category
693
DNA binding
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
144
August, 2017
89
May, 2019
70
November, 2017
62
April, 2019
35
May, 2024
34
December, 2017
34
October, 2018
27
May, 2020
12
October, 2017
7
November, 2018
6
January, 2019
3
December, 2018
2
March, 2020
Available data
587
bigWig
568
bed narrowPeak
531
bam
357
bigBed narrowPeak
186
tagAlign
137
fastq
35
bed broadPeak
23
bed bed3+
1
tagAlign bed3+
Organism
687
Homo sapiens
Biosample type
693
tissue
339
cell line
237
primary cell
150
in vitro differentiated cells
2
stem cell
Organ
184
brain
106
liver
97
heart
82
pancreas
54
blood vessel
54
vasculature
49
limb
45
connective tissue
44
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
12
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
691
AMP
2
T1D
Genome assembly (visualization)
559
GRCh38
503
hg19
Lab
658
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
693 results
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Clear Filters
ChIP-seq
tissue
liver
100
islet of Langerhans
56
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
26
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