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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
Assay category
118
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
103
August, 2017
9
June, 2019
5
October, 2018
1
October, 2019
Available data
75
bigWig
74
bam
65
fastq
58
bed narrowPeak
19
tagAlign
15
bigBed narrowPeak
10
bed bed3+
1
bed broadPeak
Organism
118
Homo sapiens
Biosample type
59
in vitro differentiated cells
50
tissue
9
primary cell
Organ
440
liver
190
brain
170
pancreas
118
connective tissue
102
epithelium
80
vasculature
78
blood vessel
74
heart
52
blood
52
bodily fluid
49
adipose tissue
49
limb
40
kidney
musculature of body
25
artery
24
nerve
15
embryo
15
vein
12
spleen
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
118
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
in vitro differentiated cells
adipocyte
59
tissue
subcutaneous abdominal adipose tissue
31
white adipose tissue
12
omental fat pad
3
subcutaneous adipose tissue
2
adipose tissue
1
+ See 1 more…
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
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