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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
633
ChIP-seq
Assay category
633
DNA binding
Target of assay
633
histone modification
632
histone
450
transcription factor
329
narrow histone mark
303
broad histone mark
271
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
124
August, 2017
89
May, 2019
85
November, 2017
60
April, 2019
30
October, 2018
27
May, 2020
12
October, 2017
10
November, 2019
7
December, 2017
7
January, 2019
3
August, 2021
3
March, 2020
1
May, 2021
Available data
526
bigWig
522
bed narrowPeak
503
bam
332
bigBed narrowPeak
197
tagAlign
92
fastq
49
bed broadPeak
14
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
627
Homo sapiens
Biosample type
593
tissue
primary cell
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
92
pancreas
88
liver
60
heart
54
blood vessel
54
vasculature
49
limb
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
12
epithelium
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
629
AMP
4
T1D
Genome assembly (visualization)
493
GRCh38
477
hg19
Lab
630
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
19
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
633 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
51
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 99 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
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