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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
Assay category
145
DNA binding
Target of assay
308
control
145
histone
145
histone modification
74
narrow histone mark
71
broad histone mark
45
transcription factor
9
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
79
August, 2017
24
October, 2019
20
May, 2021
14
November, 2017
6
October, 2017
1
August, 2021
1
December, 2017
Available data
604
bigWig
bed narrowPeak
582
bam
344
bigBed narrowPeak
223
tagAlign
157
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
145
Homo sapiens
Biosample type
108
tissue
34
in vitro differentiated cells
primary cell
3
cell line
Organ
43
connective tissue
30
adipose tissue
22
liver
20
brain
12
pancreas
6
musculature of body
4
gonad
4
ovary
2
eye
1
embryo
1
limb
1
lymph node
Project
145
AMP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
125
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
tissue
islet of Langerhans
32
subcutaneous abdominal adipose tissue
30
liver
20
brain
6
skeletal muscle tissue
6
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
20
adipocyte
12
neural progenitor cell
1
pancreatic endoderm
1
cell line
HepG2
2
Panc1
1
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