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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
Assay category
76
DNA binding
Target of assay
338
transcription factor
85
control
82
recombinant protein
76
histone modification
75
histone
58
RNA binding protein
42
broad histone mark
33
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
33
August, 2017
May, 2020
17
December, 2017
15
November, 2017
6
August, 2021
5
October, 2019
Available data
56
bigWig
54
bed narrowPeak
53
bam
45
fastq
35
bigBed narrowPeak
31
tagAlign
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
76
Homo sapiens
Biosample type
43
tissue
18
cell line
12
in vitro differentiated cells
3
primary cell
Organ
187
brain
151
pancreas
93
epithelium
78
connective tissue
76
liver
71
vasculature
70
blood vessel
62
heart
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
76
AMP
Genome assembly (visualization)
56
hg19
51
GRCh38
Lab
73
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
month_released!
May, 2020
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
tissue
liver
38
right lobe of liver
5
cell line
HepG2
18
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
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