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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
Assay category
221
DNA binding
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
19
June, 2019
6
October, 2019
3
August, 2021
3
May, 2019
2
November, 2017
Available data
217
bigWig
205
bed narrowPeak
187
bam
98
tagAlign
72
fastq
36
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
bed bed3+
Organism
221
Homo sapiens
Biosample type
539
tissue
221
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
137
AMP
84
T1D
Genome assembly (visualization)
217
hg19
187
GRCh38
Lab
114
Kyle Gaulton, UCSD
107
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
12
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