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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
652
ChIP-seq
Assay category
652
DNA binding
Target of assay
652
histone modification
651
histone
480
transcription factor
342
narrow histone mark
308
broad histone mark
267
control
90
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
168
October, 2019
121
August, 2017
88
May, 2019
85
November, 2017
60
April, 2019
31
December, 2017
27
May, 2020
20
May, 2021
17
August, 2021
16
February, 2018
12
October, 2017
7
January, 2019
Available data
520
bigWig
519
bed narrowPeak
503
bam
295
bigBed narrowPeak
208
tagAlign
115
fastq
37
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
1
tagAlign bed3+
Organism
652
Homo sapiens
Biosample type
520
tissue
primary cell
111
in vitro differentiated cells
19
cell line
2
stem cell
Organ
184
brain
100
liver
pancreas
70
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
27
epithelium
25
musculature of body
24
nerve
20
artery
20
kidney
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
652
AMP
Genome assembly (visualization)
493
GRCh38
470
hg19
Lab
629
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
21
inconsistent control read length
organ_slims!
pancreas
biosample_type!
primary cell
BIOSAMPLE
ASSAY
652 results
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Clear Filters
ChIP-seq
tissue
liver
65
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
islet of Langerhans
21
+ See 96 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 6 more…
cell line
HepG2
18
GM12878
1
stem cell
hESC
2
See all biosamples
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