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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
Assay category
132
DNA binding
Target of assay
90
histone
90
histone modification
48
broad histone mark
43
transcription factor
42
control
41
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
83
August, 2017
18
October, 2018
11
June, 2019
10
December, 2017
9
February, 2018
1
October, 2019
Available data
81
bam
70
fastq
46
bed narrowPeak
46
bigWig
22
tagAlign
9
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
Organism
132
Homo sapiens
Biosample type
64
in vitro differentiated cells
57
tissue
11
primary cell
Organ
218
brain
211
liver
204
pancreas
123
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
7
blood
7
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
132
AMP
Genome assembly (visualization)
48
hg19
47
GRCh38
Lab
132
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
in vitro differentiated cells
adipocyte
45
pancreatic endoderm
15
Hepatic endoderm
4
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
2
islet of Langerhans
1
primary cell
mesenchymal stem cell
7
cardiac fibroblast
4
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