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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
ChIP-seq
Assay category
386
DNA binding
Target of assay
745
histone modification
744
histone
499
transcription factor
384
narrow histone mark
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
68
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
315
bigWig
312
bed narrowPeak
304
bam
127
tagAlign
123
bigBed narrowPeak
72
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
384
Homo sapiens
Biosample type
310
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
59
liver
42
pancreas
30
connective tissue
23
heart
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
382
AMP
4
T1D
Genome assembly (visualization)
301
hg19
295
GRCh38
Lab
374
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
broad histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
386 results
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Clear Filters
ChIP-seq
tissue
liver
43
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 99 more…
in vitro differentiated cells
adipocyte
17
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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