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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
Assay category
397
DNA binding
Target of assay
776
histone modification
775
histone
504
transcription factor
395
narrow histone mark
broad histone mark
308
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
68
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
11
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
2
October, 2017
Available data
326
bigWig
323
bed narrowPeak
300
bam
127
tagAlign
123
bigBed narrowPeak
72
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
395
Homo sapiens
Biosample type
323
tissue
primary cell
56
in vitro differentiated cells
17
cell line
1
stem cell
Organ
114
brain
59
liver
38
heart
38
pancreas
30
connective tissue
18
blood vessel
18
vasculature
15
limb
12
adipose tissue
12
epithelium
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
397
AMP
T1D
Genome assembly (visualization)
306
GRCh38
297
hg19
Lab
370
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
broad histone mark
biosample_type!
primary cell
award.project!
T1D
BIOSAMPLE
ASSAY
397 results
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Clear Filters
ChIP-seq
tissue
liver
43
islet of Langerhans
35
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
17
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
4
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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