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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
Assay category
371
DNA binding
Target of assay
710
histone modification
709
histone
465
transcription factor
370
narrow histone mark
broad histone mark
276
control
95
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
131
October, 2019
39
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
315
bigWig
312
bed narrowPeak
290
bam
122
bigBed narrowPeak
120
tagAlign
58
fastq
20
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
369
Homo sapiens
Biosample type
312
tissue
primary cell
39
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
59
liver
42
pancreas
38
heart
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
367
AMP
4
T1D
Genome assembly (visualization)
296
GRCh38
286
hg19
Lab
344
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
broad histone mark
biosample_type!
primary cell
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
tissue
liver
43
islet of Langerhans
36
left cardiac atrium
15
kidney
10
heart left ventricle
9
+ See 98 more…
in vitro differentiated cells
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
+ See 6 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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