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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
Assay category
115
DNA binding
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
112
bigWig
104
bed narrowPeak
103
bam
47
tagAlign
40
fastq
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
115
Homo sapiens
Biosample type
325
tissue
115
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
75
AMP
40
T1D
Genome assembly (visualization)
112
hg19
102
GRCh38
Lab
65
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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