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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
Assay category
106
DNA binding
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
9
October, 2019
3
June, 2019
3
November, 2017
2
August, 2021
Available data
103
bigWig
95
bed narrowPeak
94
bam
47
tagAlign
40
fastq
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
106
Homo sapiens
Biosample type
307
tissue
106
primary cell
53
in vitro differentiated cells
13
cell line
1
stem cell
Organ
33
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
3
brain
3
kidney
2
liver
1
eye
1
musculature of body
Project
66
AMP
40
T1D
Genome assembly (visualization)
103
hg19
93
GRCh38
Lab
56
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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