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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
326
transcription factor
108
control
102
histone modification
101
histone
81
recombinant protein
59
narrow histone mark
56
RNA binding protein
42
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
13
August, 2017
7
December, 2017
6
November, 2017
4
August, 2021
2
October, 2019
Available data
51
bigWig
50
bed narrowPeak
49
bam
40
tagAlign
18
fastq
13
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
59
Homo sapiens
Biosample type
44
tissue
8
cell line
5
in vitro differentiated cells
2
primary cell
Organ
116
brain
59
liver
47
pancreas
38
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
nerve
7
embryo
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
59
AMP
Genome assembly (visualization)
51
hg19
40
GRCh38
Lab
57
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ChIP-seq
tissue
liver
42
right lobe of liver
2
cell line
HepG2
8
in vitro differentiated cells
hepatocyte
5
primary cell
hepatocyte
2
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