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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
Assay category
69
DNA binding
Target of assay
147
histone
147
histone modification
78
broad histone mark
69
narrow histone mark
53
control
19
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
34
August, 2017
15
September, 2018
11
October, 2018
4
November, 2019
3
October, 2019
1
May, 2019
1
May, 2021
Available data
65
bigWig
63
bam
55
bed narrowPeak
48
fastq
19
bigBed narrowPeak
7
tagAlign
6
bed bed3+
4
bed broadPeak
Organism
67
Homo sapiens
Biosample type
31
primary cell
30
tissue
7
cell line
1
in vitro differentiated cells
Organ
117
brain
69
pancreas
60
liver
47
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
69
AMP
T1D
Genome assembly (visualization)
65
hg19
63
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
award.project!
T1D
BIOSAMPLE
ASSAY
69 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
tissue
islet of Langerhans
14
body of pancreas
6
endocrine pancreas
6
pancreas
4
cell line
EndoC_BH1
4
Panc1
3
in vitro differentiated cells
pancreatic PP cell
1
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