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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
Assay category
69
DNA binding
Target of assay
138
histone
138
histone modification
69
broad histone mark
69
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
22
August, 2017
15
September, 2018
12
May, 2021
11
June, 2019
3
November, 2017
3
October, 2019
2
August, 2021
1
May, 2019
Available data
67
bigWig
59
bed narrowPeak
57
bam
40
fastq
21
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
tagAlign
2
bed bed3+
Organism
69
Homo sapiens
Biosample type
322
tissue
69
primary cell
55
in vitro differentiated cells
17
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
69
AMP
40
T1D
Genome assembly (visualization)
67
hg19
57
GRCh38
Lab
59
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
epithelial cell of proximal tubule
4
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