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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
Assay category
374
DNA binding
Target of assay
738
histone modification
737
histone
432
transcription factor
374
narrow histone mark
363
broad histone mark
94
RNA binding protein
88
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
117
October, 2019
51
May, 2021
38
August, 2017
34
May, 2019
29
November, 2017
27
May, 2020
23
April, 2019
15
September, 2018
11
June, 2019
11
October, 2018
4
August, 2021
4
November, 2019
3
December, 2017
3
January, 2019
3
March, 2020
1
October, 2017
Available data
385
bigWig
374
bed narrowPeak
364
bam
162
tagAlign
144
bigBed narrowPeak
77
fastq
29
bed broadPeak
14
bigBed broadPeak
9
bed bed3+
1
tagAlign bed3+
Organism
372
Homo sapiens
Biosample type
251
tissue
104
primary cell
in vitro differentiated cells
18
cell line
1
stem cell
Organ
106
brain
58
pancreas
46
liver
40
epithelium
25
heart
25
vasculature
24
blood vessel
15
kidney
14
limb
11
musculature of body
8
nerve
6
artery
6
connective tissue
5
vein
2
adipose tissue
2
spleen
1
blood
1
bodily fluid
1
eye
1
pituitary gland
Project
330
AMP
44
T1D
Genome assembly (visualization)
358
hg19
343
GRCh38
Lab
322
AMP-T2D consortium
50
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
18
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
374 results
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Clear Filters
ChIP-seq
tissue
liver
34
islet of Langerhans
10
kidney
10
heart left ventricle
9
tibial nerve
8
+ See 97 more…
primary cell
monocyte
40
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
endothelial cell of umbilical vein
5
+ See 16 more…
cell line
HepG2
8
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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