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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
26
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
11
September, 2018
9
October, 2019
8
August, 2017
4
November, 2019
2
August, 2021
2
June, 2019
2
November, 2017
1
March, 2020
1
May, 2019
1
May, 2021
Available data
41
bam
40
bed narrowPeak
40
bigWig
21
fastq
10
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
tagAlign
Organism
41
Homo sapiens
Biosample type
35
primary cell
in vitro differentiated cells
6
cell line
Organ
117
brain
72
pancreas
55
liver
41
epithelium
26
vasculature
25
blood vessel
25
heart
17
connective tissue
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
39
AMP
2
T1D
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
41
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
pancreatic acinar cell
4
pancreatic alpha cell
4
+ See 6 more…
cell line
EndoC_BH1
6
See all biosamples
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