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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
Assay category
385
DNA binding
Target of assay
760
histone modification
759
histone
493
transcription factor
385
narrow histone mark
373
broad histone mark
298
control
103
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
126
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
15
May, 2024
14
December, 2017
11
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
3
January, 2019
2
March, 2020
2
October, 2017
Available data
318
bigWig
315
bed narrowPeak
292
bam
127
tagAlign
123
bigBed narrowPeak
68
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
383
Homo sapiens
Biosample type
318
tissue
primary cell
53
in vitro differentiated cells
13
cell line
1
stem cell
Organ
112
brain
58
liver
38
heart
36
pancreas
29
connective tissue
18
blood vessel
18
vasculature
15
limb
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
6
artery
6
embryo
6
epithelium
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
383
AMP
2
T1D
Genome assembly (visualization)
298
GRCh38
289
hg19
Lab
358
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
organ_slims!
gonad
BIOSAMPLE
ASSAY
385 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
33
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 98 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 6 more…
cell line
HepG2
9
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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