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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
381
ChIP-seq
Assay category
381
DNA binding
Target of assay
738
histone modification
737
histone
485
transcription factor
381
narrow histone mark
355
broad histone mark
304
control
93
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
January, 2019
3
March, 2020
2
October, 2017
Available data
310
bigWig
307
bed narrowPeak
299
bam
127
tagAlign
120
bigBed narrowPeak
67
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
379
Homo sapiens
Biosample type
307
tissue
primary cell
55
in vitro differentiated cells
18
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
29
connective tissue
23
heart
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
377
AMP
4
T1D
Genome assembly (visualization)
296
hg19
290
GRCh38
Lab
369
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
month_released!
January, 2019
BIOSAMPLE
ASSAY
381 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 98 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
stem cell
hESC
1
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