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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ChIP-seq
Assay category
382
DNA binding
Target of assay
739
histone modification
738
histone
493
transcription factor
382
narrow histone mark
355
broad histone mark
300
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
March, 2020
2
October, 2017
1
January, 2019
Available data
311
bigWig
308
bed narrowPeak
300
bam
127
tagAlign
121
bigBed narrowPeak
68
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
380
Homo sapiens
Biosample type
307
tissue
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
29
connective tissue
23
heart
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
378
AMP
4
T1D
Genome assembly (visualization)
297
hg19
291
GRCh38
Lab
370
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
organ_slims!
spleen
BIOSAMPLE
ASSAY
382 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 98 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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