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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
Assay category
108
DNA binding
Target of assay
410
transcription factor
152
histone
152
histone modification
121
control
89
recombinant protein
76
RNA binding protein
76
broad histone mark
75
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
22
November, 2017
18
August, 2017
15
December, 2017
12
May, 2021
9
August, 2021
8
February, 2018
7
January, 2019
7
November, 2018
4
November, 2019
3
October, 2019
2
December, 2018
1
March, 2020
Available data
93
bigWig
92
bam
92
bed narrowPeak
75
fastq
46
bigBed narrowPeak
17
tagAlign
10
bed broadPeak
10
bigBed broadPeak
5
bed bed3+
Organism
108
Homo sapiens
Biosample type
tissue
primary cell
58
in vitro differentiated cells
49
cell line
1
stem cell
Organ
35
liver
18
connective tissue
15
epithelium
11
blood
11
bodily fluid
10
pancreas
8
embryo
Project
106
AMP
2
T1D
Genome assembly (visualization)
93
hg19
88
GRCh38
Lab
96
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
8
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
in vitro differentiated cells
adipocyte
18
embryonic stem cell
11
neural progenitor cell
7
hepatocyte
6
pancreatic endoderm
6
+ See 7 more…
cell line
HepG2
29
GM12878
11
EndoC_BH1
6
Panc1
3
stem cell
hESC
1
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