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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
156
control
58
histone
58
histone modification
31
broad histone mark
27
narrow histone mark
26
transcription factor
7
RNA binding protein
3
nucleotide modification
1
recombinant protein
Date released
12
August, 2017
12
May, 2021
1
December, 2017
1
November, 2017
1
October, 2019
Available data
172
bigWig
bed narrowPeak
162
bam
82
fastq
64
tagAlign
41
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
7
bed bed3+
Organism
27
Homo sapiens
Biosample type
tissue
15
in vitro differentiated cells
11
primary cell
1
cell line
Organ
8
pancreas
4
connective tissue
1
blood vessel
1
embryo
1
epithelium
1
liver
1
vasculature
1
vein
Project
27
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
17
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
9
missing controlled_by
Audit category:
1
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
embryonic stem cell
10
adipocyte
4
pancreatic endoderm
1
primary cell
pancreatic endocrine cell
8
endothelial cell of umbilical vein
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
cell line
HepG2
1
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