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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
Assay category
17
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
36
histone
36
histone modification
30
chromatin remodeller
19
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
7
November, 2017
4
November, 2019
3
October, 2019
2
August, 2021
1
January, 2019
Available data
17
bigWig
16
bed narrowPeak
15
bam
10
bigBed narrowPeak
8
fastq
6
bed broadPeak
6
bigBed broadPeak
5
tagAlign
Organism
17
Homo sapiens
Biosample type
307
tissue
75
primary cell
55
in vitro differentiated cells
17
cell line
1
stem cell
Organ
9
liver
7
pancreas
4
epithelium
1
blood
1
bodily fluid
Project
17
AMP
2
T1D
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
cell line
HepG2
9
EndoC_BH1
4
Panc1
3
GM12878
1
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