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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
9
November, 2017
4
November, 2019
3
October, 2019
2
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
21
bigWig
20
bed narrowPeak
19
bam
12
bigBed narrowPeak
10
fastq
7
bed broadPeak
7
bigBed broadPeak
5
tagAlign
Organism
21
Homo sapiens
Biosample type
327
tissue
115
primary cell
55
in vitro differentiated cells
21
cell line
1
stem cell
Organ
11
liver
9
pancreas
6
epithelium
1
blood
1
bodily fluid
Project
19
AMP
2
T1D
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
19
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
cell line
HepG2
11
EndoC_BH1
6
Panc1
3
GM12878
1
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