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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
22
November, 2017
7
January, 2019
7
November, 2018
4
November, 2019
3
October, 2019
2
August, 2021
2
December, 2018
1
March, 2020
1
May, 2021
Available data
49
bigWig
48
bed narrowPeak
47
bam
40
bigBed narrowPeak
38
fastq
10
bed broadPeak
10
bigBed broadPeak
5
tagAlign
Organism
49
Homo sapiens
Biosample type
311
tissue
116
primary cell
58
in vitro differentiated cells
49
cell line
1
stem cell
Organ
29
liver
11
blood
11
bodily fluid
9
pancreas
6
epithelium
Project
47
AMP
2
T1D
Genome assembly (visualization)
49
hg19
44
GRCh38
Lab
47
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
29
GM12878
11
EndoC_BH1
6
Panc1
3
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