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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
Assay category
56
DNA binding
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
11
RNA binding protein
3
chromatin remodeller
Date released
16
August, 2017
14
December, 2017
11
May, 2021
8
February, 2018
7
August, 2021
Available data
42
bam
41
bed narrowPeak
41
bigWig
34
fastq
12
tagAlign
5
bed bed3+
5
bigBed narrowPeak
Organism
56
Homo sapiens
Biosample type
309
tissue
115
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
16
connective tissue
8
embryo
8
epithelium
5
liver
1
pancreas
Project
56
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
46
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
Posterior foregut
1
endocrine cell
1
pancreatic PP cell
1
posterior foregut
1
stem cell
hESC
1
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