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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
Assay category
54
DNA binding
Target of assay
102
histone
102
histone modification
54
narrow histone mark
53
control
48
broad histone mark
9
transcription factor
5
nucleotide modification
3
RNA binding protein
Date released
30
August, 2017
15
September, 2018
4
November, 2019
3
March, 2020
2
May, 2021
Available data
69
bigWig
67
bam
59
bed narrowPeak
48
fastq
bigBed narrowPeak
7
tagAlign
6
bed bed3+
4
bed broadPeak
Organism
54
Homo sapiens
Biosample type
31
primary cell
16
tissue
6
cell line
1
in vitro differentiated cells
Organ
84
brain
54
pancreas
46
liver
34
epithelium
28
connective tissue
11
adipose tissue
8
embryo
7
musculature of body
5
kidney
4
gonad
4
ovary
3
heart
2
eye
1
blood vessel
1
limb
1
lymph node
1
pituitary gland
1
vasculature
1
vein
Project
50
AMP
4
T1D
Genome assembly (visualization)
50
hg19
48
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
tissue
islet of Langerhans
16
cell line
EndoC_BH1
6
in vitro differentiated cells
pancreatic PP cell
1
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