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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
Assay category
138
DNA binding
Target of assay
368
histone
368
histone modification
230
broad histone mark
138
narrow histone mark
77
transcription factor
32
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
34
May, 2019
22
April, 2019
22
November, 2017
17
October, 2019
12
August, 2017
11
June, 2019
11
October, 2018
7
December, 2017
2
January, 2019
Available data
394
bed narrowPeak
394
bigWig
360
bam
168
tagAlign
138
bigBed narrowPeak
74
fastq
22
bed broadPeak
10
bed bed3+
8
bigBed broadPeak
1
tagAlign bed3+
Organism
136
Homo sapiens
Biosample type
107
tissue
26
primary cell
cell line
5
in vitro differentiated cells
Organ
32
brain
25
vasculature
24
blood vessel
22
heart
16
pancreas
15
epithelium
14
limb
10
kidney
8
liver
8
nerve
6
artery
6
musculature of body
5
connective tissue
5
vein
2
spleen
1
adipose tissue
1
eye
Project
138
AMP
Genome assembly (visualization)
137
GRCh38
122
hg19
Lab
138
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ChIP-seq
tissue
heart left ventricle
8
kidney
8
tibial nerve
8
body of pancreas
6
endocrine pancreas
6
+ See 24 more…
primary cell
skeletal muscle myoblast
6
endothelial cell of umbilical vein
5
skeletal muscle satellite cell
3
cardiac fibroblast
2
mesenchymal stem cell
2
+ See 8 more…
in vitro differentiated cells
hepatocyte
5
See all biosamples
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