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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
Assay category
47
DNA binding
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
44
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
16
August, 2017
12
December, 2017
11
May, 2021
8
February, 2018
August, 2021
Available data
33
bam
33
bed narrowPeak
33
bigWig
32
fastq
5
bigBed narrowPeak
5
tagAlign
4
bed bed3+
Organism
47
Homo sapiens
Biosample type
320
tissue
90
primary cell
47
in vitro differentiated cells
16
cell line
1
stem cell
Organ
16
connective tissue
8
epithelium
7
embryo
5
liver
1
pancreas
Project
47
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
Lab
37
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2021
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
hepatocyte
5
pancreatic endoderm
5
Hepatic endoderm
2
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