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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
Assay category
113
DNA binding
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
August, 2021
1
May, 2019
Available data
110
bigWig
102
bed narrowPeak
101
bam
45
tagAlign
40
fastq
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
324
tissue
113
primary cell
48
in vitro differentiated cells
17
cell line
1
stem cell
Organ
33
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
1
eye
Project
73
AMP
40
T1D
Genome assembly (visualization)
110
hg19
100
GRCh38
Lab
63
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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