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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
92
histone
92
histone modification
48
narrow histone mark
44
broad histone mark
29
control
8
transcription factor
7
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
11
September, 2018
9
October, 2019
8
August, 2017
7
December, 2017
4
November, 2019
2
August, 2021
2
May, 2021
2
November, 2017
1
June, 2019
1
March, 2020
1
May, 2019
Available data
48
bam
47
bed narrowPeak
47
bigWig
28
fastq
14
bigBed narrowPeak
3
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
48
Homo sapiens
Biosample type
34
primary cell
8
in vitro differentiated cells
6
cell line
Organ
115
brain
73
pancreas
60
liver
49
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
46
AMP
2
T1D
Genome assembly (visualization)
47
GRCh38
47
hg19
Lab
48
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2017
organ_slims!
eye
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
pancreatic acinar cell
4
pancreatic alpha cell
4
+ See 5 more…
in vitro differentiated cells
hepatocyte
5
Hepatic endoderm
2
pancreatic PP cell
1
cell line
EndoC_BH1
6
See all biosamples
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