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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
Assay category
252
DNA binding
Target of assay
570
histone modification
569
histone
492
transcription factor
316
broad histone mark
272
control
252
narrow histone mark
99
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
204
bigWig
201
bed narrowPeak
193
bam
108
bigBed narrowPeak
87
tagAlign
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
180
tissue
primary cell
55
in vitro differentiated cells
16
cell line
1
stem cell
Organ
56
liver
40
brain
39
pancreas
28
connective tissue
21
heart
14
blood vessel
14
epithelium
14
vasculature
12
adipose tissue
9
musculature of body
8
embryo
8
kidney
2
artery
2
limb
2
spleen
1
blood
1
bodily fluid
Project
248
AMP
4
T1D
Genome assembly (visualization)
188
hg19
182
GRCh38
Lab
240
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
October, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
tissue
liver
40
islet of Langerhans
16
subcutaneous abdominal adipose tissue
11
heart left ventricle
9
kidney
8
+ See 26 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
GM12878
1
stem cell
hESC
1
See all biosamples
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