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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
Assay category
108
DNA binding
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
3
October, 2019
2
August, 2021
2
November, 2017
1
May, 2019
Available data
106
bigWig
98
bed narrowPeak
96
bam
47
tagAlign
39
fastq
20
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
Organism
108
Homo sapiens
Biosample type
306
tissue
108
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
68
AMP
40
T1D
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
58
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
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